If a tournament allows double entry for players, when a player will reach the final on both sides (or the 3rd place play-off), the End Tournament button will not work and will generate an error (see 1st screenshot).
That was for single elimination format. But there is a similar problem for Best of X format tournaments when double entry is allowed - when a player reach the stage (final or 3rd place play-off) to play against himself, the score can't be entered and the tournament gets stuck (see 2nd screenshot).